STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

Table: Correlation between STEPdb and Gene Ontology terms  Export to Excel  

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Correlation between STEPdb and Gene Ontology terms

(mouse over and click on the one letter topology symbols to see which proteins of this specific subproteome are localized in each location)

Bacterial cell cartoon of sub-cellular locations


STEPdb
One letter
STEPdb
Fullname
Gene Ontology ID
Gene Ontology Term
N
Nucleoid
Nucleoid
r
Ribosome
Ribosome
A
Cytoplasmic
Cytoplasmic part
F1
Peripheral inner membrane protein facing the cytoplasm
Extrinsic to internal side of plasma membrane
B
Integral Inner Membrane
Integral to plasma membrane
F2
Peripheral inner membrane protein facing the periplasm
Extrinsic to external side of plasma membrane
E
Inner Membrane Lipoprotein
Intrinsic to external side of plasma membrane
G
Periplasmic
Periplasmic space
I
Outer Membrane Lipoprotein
Intrinsic to internal side of cell outer membrane
F3
Peripheral outer membrane protein facing the periplasm
Extrinsic to internal side of cell outer membrane
H
Outer Membrane b-barrel protein
Integral to cell outer membrane
F4
Peripheral outer membrane protein facing the extracellular space
Extrinsic to external side of cell outer membrane
X
Extracellular
Extracellular matrix part
 
 
Flagellum
 
 
Pilus
P
Peptidoglycan binding
peptidoglycan binding
V
Extracellular vesicle
Bacterial extracellular vesicle
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