STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

View: E.coli K-12 (MG1655) Sec membranome  Export to Excel  Export to HTML  Export to XML  Export to CSV  

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E.coli K-12 (MG1655) Sec membranome

Bacterial cell cartoon of sub-cellular locations


Protein ID
(Uniprot)
Accession
(Uniprot)
Gene Name
(Uniprot)
Order
Locus Name
Protein Name
(Uniprot)
Full Name
Symbol
Uniprot
EchoLOCATION
Extracellular Appendage
First Level
Targeting
Chaperoning
First Level
Secretion
System
Second Level
Targeting
Chaperoning
Second Level
Secretion
System
K-12 Core
Proteome
(yes/no)
K-12 Basic
Proteome
(yes/no)
YKFM_ECOLI
A5A605
ykfM
b4586
L-fucose-proton symporter (6-deoxy-L-galactose permease) (L-fucose permease)
Integral Inner Membrane
B
IM (predicted)
Membrane | Multi-pass membrane protein
-
 
SRP
SEC
 
 
no
yes
YNCL_ECOLI
A5A615
yncL
b4598 JW1439.1
Putative O-antigen transporter
Integral Inner Membrane
B
IM (predicted)
Membrane | Single-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
no
yes
YNEM_ECOLI
A5A616
yneM
b4599 JW1527.1
Uncharacterized protein yneM
Integral Inner Membrane
B
N/A
Membrane | Single-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
no
yes
YDGU_ECOLI
A5A617
ydgU
b4601 JW1589
Uncharacterized protein yfbL
Integral Inner Membrane
B
IM (predicted)
 
-
 
SRP
SEC
 
 
no
yes
YNHF_ECOLI
A5A618
ynhF
b4602 JW1649.1
O-antigen polymerase
Integral Inner Membrane
B
IM (predicted)
Membrane | Single-pass membrane protein
-
 
SRP
SEC
 
 
no
yes
DINQ_ECOLI
A5A624
dinQ
b4613
Uncharacterized protein DinQ
Integral Inner Membrane
B
IM (predicted)
Membrane | Single-pass membrane protein
-
 
SRP
SEC
 
 
no
yes
TISB_ECOLI
A5A627
tisB

ysdB

b4618 JW3649
Small toxic protein tisB (LexA-regulated protein tisB)
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane | Single-pass membrane protein
-
 
SRP
SEC
 
 
no
no
YTCA_ECOLI
A5A630
ytcA
b4622
Uncharacterized protein ytcA
Integral Inner Membrane
B
IM (predicted)
Cell membrane | Lipid-anchorMembrane | Multi-pass membrane protein
Integral Membrane Protein
 
 
SEC
 
 
no
yes
YTHA_ECOLI
A8DYQ1
ythA
b4655 JW5769.1
Uncharacterized protein ythA
Integral Inner Membrane
B
N/A
Cell membrane | Single-pass membrane protein
-
 
 
SEC
 
 
no
yes
YKGR_ECOLI
C1P5Z8
ykgR
b4671 JW5035.1
Uncharacterized membrane protein ykgR
Integral Inner Membrane
B
N/A
Membrane | Single-pass membrane protein
-
 
SRP
SEC
 
 
no
yes
YMIB_ECOLI
C1P5Z9
ymiB
b4672 JW1278.1
Putative protein ymiB
Integral Inner Membrane
B
N/A
Membrane | Single-pass membrane protein
-
 
SRP
SEC
 
 
no
yes
YOAK_ECOLI
C1P602
yoaK
b4676 JW5292.1
Inner membrane protein ybhI
Integral Inner Membrane
B
N/A
Membrane | Single-pass membrane protein
-
 
SRP
YidC
 
 
no
yes
YOAJ_ECOLI
C1P603
yoaJ
b4675 JW5292.2
Uncharacterized protein YoaJ
Integral Inner Membrane
B
N/A
Membrane | Single-pass membrane protein
-
 
SRP
YidC
 
 
no
yes
YOHP_ECOLI
C1P609
yohP
b4679 JW5358.1
Inner membrane transport protein ydiM
Integral Inner Membrane
B
N/A
Membrane | Single-pass membrane protein
-
 
SRP
SEC
 
 
no
yes
YPDK_ECOLI
C1P610
ypdK
b4680 JW2375.1
Uncharacterized transporter YeaV
Integral Inner Membrane
B
N/A
Membrane | Single-pass membrane protein
-
 
SRP
SEC
 
 
no
yes
SHOB_ECOLI
C1P611
shoB

ryfB yphI

b4687 JW2546.1
IlvBN operon leader peptide (IlvBN operon attenuator peptide)
Integral Inner Membrane
B
N/A
Membrane | Single-pass membrane protein
-
 
SRP
SEC
 
 
no
yes
YQFG_ECOLI
C1P614
yqfG
b4684 JW5470.1
Uncharacterized protein yqfG
Integral Inner Membrane
B
N/A
 
-
 
SRP
SEC
 
 
no
yes
IBSD_ECOLI
C1P616
ibsD
b4664 JW3023.1
Autoinducer 2 import system permease protein lsrD (AI-2 import system permease protein lsrD)
Integral Inner Membrane
B
N/A
Membrane | Single-pass membrane protein
-
 
 
SEC
 
 
no
yes
PMRR_ECOLI
G3MTW7
pmrR
b4703 JW4072.1
Putative membrane protein PmrR
Integral Inner Membrane
B
N/A
 
 
 
 
SEC
 
 
no
 
PHSM_ECOLI
P00490
malP
b3417 JW5689
Maltodextrin phosphorylase (EC 2.4.1.1)
Integral Inner Membrane
B
Soluble IM Fraction
 
Cytoplasmic
 
 
SEC
 
 
yes
yes
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